packsToCsv: Save packFinder Results in CSV Format (.csv)
In packFinder: de novo Annotation of Pack-TYPE Transposable Elements
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Saves a dataframe of potential Pack-TYPE elements,
usually generated via packSearch. May be
retrieved using getPacksFromCsv.
Usage
1
Arguments
packMatches
A dataframe containing genomic ranges and names referring
to sequences to be extracted. Can be obtained from
packSearch or generated from a
GRanges object,
after conversion to a dataframe. Must contain the
following features:
start - the predicted element's start base
sequence position.
end - the predicted element's end base
sequence position.
seqnames - character string referring to
the sequence name in Genome to which
start and end refer to.
file
CSV file save path.
Value
Save location of csv file.
Author(s)
Jack Gisby
See Also
getPacksFromCsv, write.table,
packSearch
Examples
1
2
3
4
5
6
data(packMatches)
packsToCsv(
packMatches,
system.file("extdata", "packMatches.csv", package = "packFinder")
)
packFinder documentation built on Nov. 8, 2020, 5:24 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Saves a dataframe of potential Pack-TYPE elements,
usually generated via packSearch. May be
retrieved using getPacksFromCsv.
Usage
1 |
Arguments
packMatches |
A dataframe containing genomic ranges and names referring
to sequences to be extracted. Can be obtained from
|
file |
CSV file save path. |
Value
Save location of csv file.
Author(s)
Jack Gisby
See Also
getPacksFromCsv, write.table,
packSearch
Examples
1 2 3 4 5 6 | data(packMatches)
packsToCsv(
packMatches,
system.file("extdata", "packMatches.csv", package = "packFinder")
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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