API for pcaGoPromoter
pcaGoPromoter is used to analyze DNA micro array data
| Global functions | |
|---|---|
| GOtree | Man page Source code |
| GOtreeHits | Man page Source code |
| GOtreeWithLeaveOut | Man page Source code |
| cleanUpTargetSet | Source code |
| convertFromProbeIdsToRefseqs | Source code |
| convertInput | Source code |
| dropVarNull | Source code |
| getGOidsInOntology | Source code |
| getGOidsWithChildren | Source code |
| getGOsDownTree | Source code |
| getMatricesWithHits | Source code |
| getRankedProbeIds | Man page Source code |
| getRankedProbeIds.pca | Man page Source code |
| getSigGOTermsOnce | Source code |
| indexOfDupletsList | Source code |
| leaveOutFindPvalues | Source code |
| multiPca | Source code |
| newSearchGOtreeForTerms | Source code |
| pca | Man page Source code |
| pcaGoPromoter | Man page |
| pcaGoPromoter-package | Man page |
| pcaInfoPlot | Man page Source code |
| pcaLeaveOut | Source code |
| plot.GOtree | Man page Source code |
| plot.pca | Man page Source code |
| primo | Man page Source code |
| primoData | Man page Source code |
| primoData.convertPromoterFromTextToNumbers | Source code |
| primoData.convertToNumbers | Source code |
| primoData.findDubletSequences | Source code |
| primoData.findDublets | Source code |
| primoData.getAllThresholds | Source code |
| primoData.getPromoters | Source code |
| primoData.getPwmValuesInPromotersFast | Source code |
| primoData.getThresholdNew | Source code |
| primoData.removeBadSequences | Source code |
| primoHits | Man page Source code |
| primoWithLeaveOut | Man page Source code |
| print.GOtree | Man page Source code |
| print.pca | Man page Source code |
| printAnnText | Source code |
| printAnnotation | Source code |
