Our approach provides a way to assign continuous cell cycle phase using scRNA-seq data, and consequently, allows to identify cyclic trend of gene expression levels along the cell cycle. This package provides method and training data, which includes scRNA-seq data collected from 6 individual cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell cycle phase derived from FUCCI fluorescence imaging data.
|Author||Chiaowen Joyce Hsiao [aut, cre], Matthew Stephens [aut], John Blischak [ctb], Peter Carbonetto [ctb]|
|Bioconductor views||Classification GeneExpression RNASeq Sequencing SingleCell Software StatisticalMethod Transcriptomics Visualization|
|Maintainer||Chiaowen Joyce Hsiao <firstname.lastname@example.org>|
|License||GPL (>= 3)|
|Package repository||View on Bioconductor|
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