Description Usage Arguments Value Author(s) See Also

For prediction, initialize grid points for cell cycle phase on a circle.

1 | ```
initialize_grids(Y, grids = 100, method.grid = c("pca", "uniform"))
``` |

`Y` |
Gene expression matrix. Gene by sample. |

`grids` |
number of bins to be selected along 0 to 2pi. |

`method.grid` |
The approach to initialize angles in the
computation. |

A vector of initialized angles to be used in
`cycle_npreg_loglik`

to infer angles.

Joyce Hsiao

`cycle_npreg_loglik`

for log-likehood at
angles between 0 to 2pi,
`cycle_npreg_mstep`

for estimating cyclic functions given
inferred phases from `cycle_npreg_loglik`

,
`cycle_npreg_outsample`

for predicting cell cycle phase
using parameters learned from `cycle_npreg_insample`

Other peco classifier functions: `cycle_npreg_insample`

,
`cycle_npreg_loglik`

,
`cycle_npreg_mstep`

,
`cycle_npreg_outsample`

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