API for pepStat
Statistical analysis of peptide microarrays
| Global functions | |
|---|---|
| .applySlidingMean | Source code |
| .bgCorrect.pSet | Source code |
| .checkArgs_sumPeps | Source code |
| .check_peptideSet | Source code |
| .computeZpep | Source code |
| .findFDR | Source code |
| .makeZpepMatrix | Source code |
| .sanitize_mapping_file2 | Source code |
| .set_rownames | Source code |
| NormalizeArray | Man page |
| [,peptideSet,ANY,ANY,ANY-method | Man page |
| baselineCorrect.pSet | Man page Source code |
| baseline_correct | Man page Source code |
| clade | Man page |
| clade,GRanges-method | Man page |
| clade,peptideSet-method | Man page |
| clade-methods | Man page |
| create_db | Man page Source code |
| end,peptideSet-method | Man page |
| featureID | Man page |
| featureID,peptideSet-method | Man page |
| featureID-method | Man page |
| getPlotCoords | Source code |
| getPlotGrid | Source code |
| getWeightedEstimator | Source code |
| getZpep | Source code |
| makeCalls | Man page Source code |
| makePeptideSet | Man page Source code |
| makeResiduals | Source code |
| normalizeArray | Man page Source code |
| pepZscore | Man page |
| pepZscore,GRanges-method | Man page |
| pepZscore,peptideSet-method | Man page |
| pepZscore-method | Man page |
| pepZscore<- | Man page |
| pepZscore<-,GRanges,data.frame-method | Man page |
| pepZscore<-,peptideSet,data.frame-method | Man page |
| peptide | Man page |
| peptide,peptideSet-method | Man page |
| peptide-method | Man page |
| peptide<- | Man page |
| peptide<-,peptideSet,character-method | Man page |
| peptideSet | Man page |
| peptideSet-class | Man page |
| peptideSet-methods | Man page |
| plotArrayImage | Man page Source code |
| plotArrayResiduals | Man page Source code |
| position | Man page |
| position,peptideSet-method | Man page |
| position-method | Man page |
| ranges,peptideSet-method | Man page |
| ranges<-,peptideSet-method | Man page |
| restab | Man page Source code |
| shinyPepStat | Man page Source code |
| show,peptideSet-method | Man page |
| slidingMean | Man page Source code |
| smoothResiduals | Source code |
| start,peptideSet-method | Man page |
| subset,peptideSet-method | Man page |
| summarizePeptides | Man page Source code |
| summary,peptideSet-method | Man page |
| values,peptideSet-method | Man page |
| width,peptideSet-method | Man page |
