| baseline_correct | Substract baseline intensities |
| baselineCorrect.pSet | Substract baseline intensities |
| create_db | Create a peptide collection |
| makeCalls | Make antibody binding positivity calls |
| makePeptideSet | peptideSet constructor |
| normalizeArray | Normalize tiling array data using sequence information |
| peptideSet | peptideSet class |
| peptideSet-methods | peptideSet methods |
| plotArray | Plot microarray images |
| restab | Result table |
| shinyPepStat | Launch the pepStat Shiny Application |
| slidingMean | Data smoothing for peptide microarray. |
| summarizePeptides | Add information to a peptideSet and summarize peptides |
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