Man pages for pmp
Peak Matrix Processing and signal batch correction for metabolomics datasets

filter_peaks_by_blankFilter features by blank samples
filter_peaks_by_fractionFilter features by fraction of missing values
filter_peaks_by_rsdFilter features by RSD% of QC samples
filter_samples_by_mvFilter samples by missing values
glog_plot_optimised_lambdaPlot SSE error of lambda optimisation process
glog_transformationVariance stabilising generalised logarithm (glog)...
MTBLS79Direct-infusion mass spectrometry (DIMS) data set
mv_imputationMissing value imputation using different algorithms
normalise_to_sumNormalisation by total sum of the features per sample
pqn_normalisationProbabilistic quotient normalisation (PQN)
processing_historyReturn history of applied functions and argument from pmp...
QCRSCQuality Control-Robust Spline Correction (QC-RSC)
remove_peaksRemove features from peak intensity matrix
sbc_plotPlot QCRSC corrected outputs
pmp documentation built on April 1, 2021, 6:01 p.m.