API for prada
Data analysis for cell-based functional assays

Global functions
$.cytoFrame	Man page
.arrayPlot	Source code
.defaultPlot	Source code
.drawCircle	Source code
.drawLegend	Source code
.drawPie	Source code
.removeCensored	Source code
[,cytoFrame,ANY,ANY,ANY-method	Man page
[,cytoSet,ANY,missing,missing-method	Man page
[,gateSet,ANY,missing,missing-method	Man page
[[,cytoSet,ANY,missing-method	Man page
[[,gateSet,ANY,missing-method	Man page
[[<-,cytoSet-method	Man page
analysePlate	Man page Source code
appendGates	Man page
appendGates, gateSet_method	Man page
appendGates,cytoFrame-method	Man page
appendGates,gateSet-method	Man page
applyGate	Man page
applyGate,cytoFrame,character-method	Man page
applyGate,cytoFrame,gate-method	Man page
applyGate,cytoFrame,gateSet-method	Man page
applyGate,cytoFrame,logical-method	Man page
applyGate,cytoFrame,numeric-method	Man page
applyGate,matrix,gate-method	Man page
applyGate,matrix,gateSet-method	Man page
as.all	Man page Source code
as.gateSet	Man page
as.gateSet,gate-method	Man page
barploterrbar	Man page Source code
cframe	Man page
colnames,cytoFrame-method	Man page
colnames,cytoSet-method	Man page
colnames<-,cytoFrame-method	Man page
colnames<-,cytoSet-method	Man page
combineFrames	Man page Source code
combineGates	Man page Source code
csApply	Man page Source code
cset	Man page
cytoFrame	Man page
cytoFrame-class	Man page
cytoSet	Man page
cytoSet-class	Man page
description,cytoFrame-method	Man page
description<-,cytoFrame,character-method	Man page
devDims	Man page Source code
devRes	Man page Source code
drawGate	Man page
drawGate,cytoFrame-method	Man page Man page
drawGate,matrix-method	Man page
drawLine	Source code
exprs,cytoFrame-method	Man page
exprs<-,cytoFrame,matrix-method	Man page
fitNorm2	Man page Source code
gate	Man page
gate,cytoFrame-method	Man page
gate-class	Man page
gate.cytoFrame	Source code
gate.cytoSet	Source code
gate.matrix	Source code
gate<-	Man page
gate<-,cytoFrame,gate-method	Man page
gate<-,cytoFrame,gateSet-method	Man page
gateMatrix	Source code
gatePoints	Man page Source code Source code
gateSet	Man page
gateSet-class	Man page
getAlphaNumeric	Man page Source code
getGateVariables	Source code
getPradaPar	Man page Source code
hist,cytoFrame-method	Man page
hist,cytoSet-method	Man page
insidePolygon	Source code
killProgress	Man page Source code
length,cytoSet-method	Man page
length,gateSet-method	Man page
lines,gate-method	Man page
myLocator	Source code
names,gate-method	Man page
names,gateSet-method	Man page
names<-,gate-method	Man page
names<-,gateSet-method	Man page
ncol,cytoFrame-method	Man page
nrow,cytoFrame-method	Man page
pData,cytoSet-method	Man page
phenoData,cytoSet-method	Man page
phenoData<-,cytoSet,AnnotatedDataFrame-method	Man page
plot,cytoFrame,missing-method	Man page
plot,cytoSet,missing-method	Man page
plot.cytoFrameGate	Source code
plot.cytoSetGate	Source code
plot.matrixGate	Source code
plotNorm2	Man page Source code
plotPlate	Man page Source code
progress	Man page Source code
range.cytoFrame	Source code
read.fcs	Man page Source code
readCytoSet	Man page Source code
readFCS	Man page Source code
readFCSdata	Man page Source code
readFCSgetPar	Man page Source code
readFCSheader	Man page Source code
readFCStext	Man page Source code
removeCensored	Man page
removeCensored,cytoFrame-method	Man page
removeCensored,data.frame-method	Man page
removeCensored,matrix-method	Man page
setPradaPars	Man page Source code
show,cytoFrame-method	Man page
show,cytoSet-method	Man page
show,gate-method	Man page
show,gateSet-method	Man page
split,cytoSet,ANY,ANY-method	Man page
split,cytoSet,ANY-method	Man page
split,cytoSet-method	Man page
threePanelPlot	Man page Source code
thresholds	Man page Source code
touchFCS	Man page Source code
updateProgress	Man page Source code
vpLocation	Man page Source code