barploterrbar: Barplot with error bars.

In prada: Data analysis for cell-based functional assays

Description

Barplot with error bars.

Usage

barploterrbar(y, yl, yh, barcol="orange", errcol="black", horiz=FALSE,
w=0.2, ylim=c(0, max(yh)*1.05), ...)

Arguments

y	Numeric vector.
yl	Numeric vector of same length as y.
yh	Numeric vector of same length as y.
barcol	Color of the bars.
errcol	Color of the error bars.
horiz	Logical. As in barplot.
w	The plot limits. The default value wil cause the error bars to fit nicely on the plotting device.
ylim	Size of the error bar ticks.
...	Further arguments that get passed on to barplot.

Details

The function calls barplot with y and decorates it with error bars according to yl and yh.

Value

The function is called for its side effect, producing a plot.

Author(s)

Wolfgang Huber http://www.dkfz.de/abt0840/whuber

See Also

barplot

Examples

  y <- matrix(runif(80), ncol=5)
  ym <- apply(y, 2, mean)
  dy <- apply(y, 2, sd)*2/sqrt(nrow(y))
  barploterrbar(ym, ym-dy, ym+dy, barcol="#0000c0", errcol="orange",
    ylim=c(0, max(ym+dy)))

Example output

Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase

Attaching package: 'robustbase'

The following object is masked from 'package:Biobase':

    rowMedians

Scalable Robust Estimators with High Breakdown Point (version 1.4-3)

prada documentation built on April 28, 2020, 7:52 p.m.