API for pram
Pooling RNA-seq datasets for assembling transcript models

Global functions
addOri Source code
buildModel Man page Source code
calFp4Jnc Source code
calTpFn4Jnc Source code
convertOri2Strand Source code
convertStrand2Ori Source code
createTmpdir Source code
defIgRanges Man page Source code
evalMdlExonNuc Source code
evalMdlJnc Source code
evalModel Man page
evalModel,GRanges,GRanges-method Man page
evalModel,character,character-method Man page
evalModel,character,data.table-method Man page
evalModel,data.table,data.table-method Man page
evalModelByTr Source code
extractBam Source code
fileExists Source code
filterBamByChromOri Source code
findMdlTrOLTgtTr Source code
findModelJncInTarget Source code
findTargetJncInModel Source code
genBamChromOri Source code
getChromGRanges Source code
getDTFromGTFFile Source code
getOS Source code
getTrFromExon Source code
getTrJncFromExon Source code
getUniChromOriDt Source code
prepIgBam Man page Source code
readChromSize Source code
runPRAM Man page Source code
selAlnByMateMaxNDup Source code
selAlnInGRanges Source code
selModel Man page Source code
splitUserBamByChromOri Source code
splitUserBams Source code
writeDT2GTFFile Source code
pram documentation built on Oct. 31, 2019, 8:31 a.m.