Files in pram

Pooling RNA-seq datasets for assembling transcript models

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/util.R R/Param.R R/defIgRanges.R R/selModel.R R/buildModel.R R/evalModel.R R/Transcript.R R/prepIgBam.R R/runPRAM.R

vignettes/workflow_noScreen.jpg

vignettes/pram.Rmd man/buildModel.Rd man/prepIgBam.Rd man/runPRAM.Rd man/defIgRanges.Rd man/evalModel.Rd man/selModel.Rd tests/runTests.R tests/testthat/test-prepIgBam.R tests/testthat/test-Transcript.R tests/testthat/test-buildModel.R tests/testthat/test-selModel.R tests/testthat/test-runPRAM.R tests/testthat/test-defIgRanges.R tests/testthat/test-evalModel.R

inst/CITATION

inst/doc/pram.R inst/doc/pram.Rmd inst/doc/pram.pdf

inst/extdata/bam/CMPRep2.sortedByCoord.raw.bam

inst/extdata/bam/CMPRep1.sortedByCoord.raw.bam

inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam

inst/extdata/bam/CMPRep1.sortedByCoord.clean.bam

inst/extdata/bam/CMPRep2.sortedByCoord.clean.bam

inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam

inst/extdata/gtf/selModel_out.gtf

inst/extdata/gtf/defIgRanges_in.gtf

inst/extdata/gtf/ig_mm10_chr12.gtf

inst/extdata/gtf/selModel_in.gtf

inst/extdata/gtf/gnc_v24_minus_chr18.gtf

inst/extdata/benchmark/tgt.tsv

inst/extdata/benchmark/plcf.tsv

inst/extdata/demo/SZP.bam

inst/extdata/demo/in.gtf

inst/extdata/demo/TLC.bam

inst/extdata/vignettes/pram.pdf

inst/extdata/chromsize/hg19.tsv.gz

inst/extdata/chromsize/mm10.tsv.gz

inst/extdata/chromsize/mm9.tsv.gz

inst/extdata/chromsize/hg38.tsv.gz

pram documentation built on Nov. 8, 2020, 11:08 p.m.