Files in pram
Pooling RNA-seq datasets for assembling transcript models

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/pram.Rmd inst/doc/pram.pdf inst/doc/pram.R
inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr12.minus.bam
inst/extdata/bam/CMPRep2.sortedByCoord.raw.bam
inst/extdata/bam/CMPRep1.sortedByCoord.raw.bam
inst/extdata/bam/CMPRep1.sortedByCoord.clean.chr10.plus.bam
inst/extdata/bam/CMPRep1.sortedByCoord.clean.bam
inst/extdata/bam/CMPRep2.sortedByCoord.clean.bam
inst/extdata/vignettes/pram.pdf
inst/extdata/demo/TLC.bam
inst/extdata/demo/in.gtf
inst/extdata/demo/SZP.bam
inst/extdata/benchmark/tgt.tsv
inst/extdata/benchmark/plcf.tsv
inst/extdata/chromsize/mm10.tsv.gz
inst/extdata/chromsize/hg38.tsv.gz
inst/extdata/chromsize/hg19.tsv.gz
inst/extdata/chromsize/mm9.tsv.gz
inst/extdata/gtf/selModel_out.gtf
inst/extdata/gtf/gnc_v24_minus_chr18.gtf
inst/extdata/gtf/ig_mm10_chr12.gtf
inst/extdata/gtf/defIgRanges_in.gtf
inst/extdata/gtf/selModel_in.gtf
vignettes/workflow_noScreen.jpg
vignettes/pram.Rmd R/selModel.R R/Param.R R/util.R R/prepIgBam.R R/buildModel.R R/defIgRanges.R R/evalModel.R R/Transcript.R R/runPRAM.R man/selModel.Rd man/prepIgBam.Rd man/runPRAM.Rd man/evalModel.Rd man/buildModel.Rd man/defIgRanges.Rd
build/vignette.rds
tests/runTests.R tests/testthat/test-buildModel.R tests/testthat/test-selModel.R tests/testthat/test-prepIgBam.R tests/testthat/test-Transcript.R tests/testthat/test-runPRAM.R tests/testthat/test-evalModel.R tests/testthat/test-defIgRanges.R
pram documentation built on Oct. 31, 2019, 8:31 a.m.