Files in proBAMr

Generating SAM file for PSMs in shotgun proteomics data

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/PSMtab2SAM.R R/PrepareAnnotationGENCODE.R

vignettes/Fig1.jpg

vignettes/Tab3.jpg

vignettes/Tab1.jpg

vignettes/proBAMr.Rnw

vignettes/Tab2.jpg

man/PrepareAnnotationGENCODE.Rd man/PSMtab2SAM.Rd tests/runTests.R inst/doc/proBAMr.R inst/doc/proBAMr.pdf

inst/doc/proBAMr.Rnw

inst/extdata/coding_seq.fasta

inst/extdata/test.gtf

inst/extdata/passedPSM.tab

inst/extdata/pro_seq.fasta

inst/extdata/header

inst/extdata/GENCODE/exon_anno.RData

inst/extdata/GENCODE/txdb.sqlite

inst/extdata/GENCODE/ids.RData

inst/extdata/GENCODE/proseq.RData

inst/extdata/GENCODE/procodingseq.RData

inst/extdata/res/test.sam

inst/extdata/res/test_header.bam

inst/extdata/res/test_header_sort.bam

inst/extdata/res/test_header_sort.bam.bai

inst/extdata/res/SAM.RData

inst/extdata/res/test_header.sam

inst/unitTests/test_PSMtab2SAM.R inst/unitTests/test_PrepareAnnotationGENCODE.R

proBAMr documentation built on Nov. 8, 2020, 8:05 p.m.