profileScoreDist: Profile score distributions

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Regularization and score distributions for position count matrices.

Author
Paal O. Westermark
Date of publication
None
Maintainer
Paal O. Westermark <pal-olof.westermark@charite.de>
License
MIT + file LICENSE
Version
1.2.0

View on Bioconductor

Man pages

backgroundDist
Background distribution.
computeScoreDist
Compute exact position weight/count matrix score...
INR
The position count matrix for INR.
plotDist
Plot background and signal distributions.
ProfileDist-class
ProfileDist
regularizeMatrix
Careful regularization (pseudocount addition) to a position...
scoreDistCutoffs
False discovery rate and power for PWM Score distributions.
signalDist
Signal distribution.

Files in this package

profileScoreDist/DESCRIPTION
profileScoreDist/LICENSE
profileScoreDist/NAMESPACE
profileScoreDist/R
profileScoreDist/R/RcppExports.R
profileScoreDist/R/data.R
profileScoreDist/R/profileDist-class.R
profileScoreDist/R/profileScoreDist.R
profileScoreDist/build
profileScoreDist/build/vignette.rds
profileScoreDist/data
profileScoreDist/data/INR.rda
profileScoreDist/inst
profileScoreDist/inst/NEWS
profileScoreDist/inst/doc
profileScoreDist/inst/doc/profileScoreDist-vignette.R
profileScoreDist/inst/doc/profileScoreDist-vignette.Rmd
profileScoreDist/inst/doc/profileScoreDist-vignette.pdf
profileScoreDist/man
profileScoreDist/man/INR.Rd
profileScoreDist/man/ProfileDist-class.Rd
profileScoreDist/man/backgroundDist.Rd
profileScoreDist/man/computeScoreDist.Rd
profileScoreDist/man/plotDist.Rd
profileScoreDist/man/regularizeMatrix.Rd
profileScoreDist/man/scoreDistCutoffs.Rd
profileScoreDist/man/signalDist.Rd
profileScoreDist/src
profileScoreDist/src/RcppExports.cpp
profileScoreDist/src/profileConvolution.cpp
profileScoreDist/src/profilePosscoreprob.cpp
profileScoreDist/vignettes
profileScoreDist/vignettes/profileScoreDist-vignette.Rmd