profileScoreDist: Profile score distributions

Regularization and score distributions for position count matrices.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("profileScoreDist")
AuthorPaal O. Westermark
Bioconductor views GeneRegulation Software StatisticalMethod
Date of publicationNone
MaintainerPaal O. Westermark <pal-olof.westermark@charite.de>
LicenseMIT + file LICENSE
Version1.2.0

View on Bioconductor

Files

DESCRIPTION
LICENSE
NAMESPACE
R
R/RcppExports.R R/data.R R/profileDist-class.R R/profileScoreDist.R
build
build/vignette.rds
data
data/INR.rda
inst
inst/NEWS
inst/doc
inst/doc/profileScoreDist-vignette.R
inst/doc/profileScoreDist-vignette.Rmd
inst/doc/profileScoreDist-vignette.pdf
man
man/INR.Rd man/ProfileDist-class.Rd man/backgroundDist.Rd man/computeScoreDist.Rd man/plotDist.Rd man/regularizeMatrix.Rd man/scoreDistCutoffs.Rd man/signalDist.Rd
src
src/RcppExports.cpp
src/profileConvolution.cpp
src/profilePosscoreprob.cpp
vignettes
vignettes/profileScoreDist-vignette.Rmd

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