INR: The position count matrix for INR.
In profileScoreDist: Profile score distributions
Description
Usage
Format
Value
Source
References
Description
The position count matrix for the initiator (INR) core promoter element. This
matrix was obtained from the JASPAR public domain database, but was
originally published by P. Bucher (1990); in that publication (and elsewhere)
it was termed Cap signal.
Usage
1
Format
A matrix with named rows corresponding to the counts for each of
the four nucleotides.
Value
The position count matrix for INR.
Source
http://jaspar.genereg.net
References
Bucher, P. (1990). Weight matrix descriptions of four eukaryotic
RNA polymerase II promoter elements derived from 502 unrelated promoter
sequences. Journal of Molecular Biology 212, 563???-578.
Mathelier, A., Zhao, X., Zhang, A.W., Parcy, F., Worsley-Hunt,
R., Arenillas, D.J., Buchman, S., Chen, C.-Y., Chou, A., Ienasescu, H., et
al. (2014). JASPAR 2014: an extensively expanded and updated open-access
database of transcription factor binding profiles. Nucleic Acids Research
42, D142–D147.
profileScoreDist documentation built on Nov. 8, 2020, 5:49 p.m.
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Description Usage Format Value Source References
Description
The position count matrix for the initiator (INR) core promoter element. This matrix was obtained from the JASPAR public domain database, but was originally published by P. Bucher (1990); in that publication (and elsewhere) it was termed Cap signal.
Usage
1 |
Format
A matrix with named rows corresponding to the counts for each of the four nucleotides.
Value
The position count matrix for INR.
Source
http://jaspar.genereg.net
References
Bucher, P. (1990). Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences. Journal of Molecular Biology 212, 563???-578.
Mathelier, A., Zhao, X., Zhang, A.W., Parcy, F., Worsley-Hunt, R., Arenillas, D.J., Buchman, S., Chen, C.-Y., Chou, A., Ienasescu, H., et al. (2014). JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Research 42, D142–D147.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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