API for profileplyr
Visualization and annotation of read signal over genomic ranges with profileplyr
| Global functions | |
|---|---|
| .profileplyr.charbound | Source code |
| .subsetprofileplyr | Source code |
| BamBigwig_to_chipProfile | Man page |
| K27ac_GRlist_hind_liver_top5000 | Man page |
| [,profileplyr,ANY,ANY,ANY-method | Man page |
| annotateRanges | Man page |
| annotateRanges,profileplyr-method | Man page |
| annotateRanges_great | Man page |
| annotateRanges_great,profileplyr-method | Man page |
| as_profileplyr | Man page |
| c,profileplyr-method | Man page |
| clusterRanges | Man page |
| clusterRanges,profileplyr-method | Man page |
| convertToEnrichedHeatmapMat | Man page |
| convertToEnrichedHeatmapMat,profileplyr-method | Man page |
| export_deepToolsMat | Man page |
| export_deepToolsMat,profileplyr-method | Man page |
| gene_list_character | Man page |
| gene_list_dataframe | Man page |
| generateEnrichedHeatmap | Man page |
| groupBy | Man page |
| groupBy,profileplyr-method | Man page |
| import_deepToolsMat | Man page |
| inherit_group_function | Man page |
| orderBy | Man page |
| orderBy,profileplyr-method | Man page |
| params | Man page |
| profileplyr-class | Man page |
| sampleData | Man page |
| sampleData,profileplyr-method | Man page |
| sampleData<- | Man page |
| sampleData<-,profileplyr,DataFrame-method | Man page |
| subset_GR_GL_common_top | Man page |
| subsetbyGeneListOverlap | Man page |
| subsetbyRangeOverlap | Man page |
| summarize | Man page |
| summarize,profileplyr-method | Man page |
