orderBy: choose the column by which to order the ranges by within each...

In profileplyr: Visualization and annotation of read signal over genomic ranges with profileplyr

Description

choose the column by which to order the ranges by within each group

Usage

orderBy(object = "profileplyr", column = "ANY")

## S4 method for signature 'profileplyr'
orderBy(object = "profileplyr", column = "ANY")

Arguments

object	A profileplyr object
column	Which column of mcols(proplyrObject) should be used for ordering the ranges. If NULL removes any previous setting for row ordering.

Details

Takes a profileplyr object and orders the rows based on a user defined metadata column of rowRanges

Value

A profileplyr object

Methods (by class)

• profileplyr: choose the column by which to order the ranges by within each group

Examples

example <- system.file("extdata", "example_deepTools_MAT", package = "profileplyr") 
object <- import_deepToolsMat(example) 

library(SummarizedExperiment)
cluster <- clusterRanges(object, fun = rowMeans, cutree_rows = 3)
cluster_order <- orderBy(cluster, column = "hierarchical_order")
params(cluster_order)$mcolToOrderBy

profileplyr documentation built on Nov. 8, 2020, 8:12 p.m.