prot2D: Statistical Tools for volume data from 2D Gel Electrophoresis

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The purpose of this package is to analyze (i.e. Normalize and select significant spots) data issued from 2D GEl experiments

Author
Sebastien Artigaud
Date of publication
None
Maintainer
Sebastien Artigaud <sebastien.artigaud@gmx.com>
License
GPL (>= 2)
Version
1.12.0

View on Bioconductor

Man pages

ES.prot
Create an ExpressionSet containing 2D Gel Volume Data
Norm.qt
Normalize 2D Gel Volume data using Quantiles Normalization
Norm.vsn
Normalize 2D Gel Volume data using VSN
pecten
Pecten Dataset
pecten.fac
pecten.fac Dataset
prot2D-package
Statistics Tools for data issued from a 2D Gel...
RIplot
Ratio-Intensity Plot for 2D Gel Volume data
robust.fdr
"robust FDR" estimation
Sim.Prot.2D
Simulate 2D Gel volume data
variousT
Various Tests for finding differentially expressed proteins...

Files in this package

prot2D/DESCRIPTION
prot2D/NAMESPACE
prot2D/R
prot2D/R/fonction_Prot_final.R
prot2D/R/robust-fdr.R
prot2D/build
prot2D/build/vignette.rds
prot2D/data
prot2D/data/pecten.RData
prot2D/data/pecten.fac.RData
prot2D/inst
prot2D/inst/CITATION
prot2D/inst/doc
prot2D/inst/doc/prot2D.R
prot2D/inst/doc/prot2D.Rnw
prot2D/inst/doc/prot2D.pdf
prot2D/man
prot2D/man/ES.prot.Rd
prot2D/man/Norm.qt.Rd
prot2D/man/Norm.vsn.Rd
prot2D/man/RIplot.Rd
prot2D/man/Sim.Prot.2D.Rd
prot2D/man/pecten.Rd
prot2D/man/pecten.fac.Rd
prot2D/man/prot2D-package.Rd
prot2D/man/robust.fdr.Rd
prot2D/man/variousT.Rd
prot2D/vignettes
prot2D/vignettes/images
prot2D/vignettes/images/RIplot.png
prot2D/vignettes/prot2D.Rnw