prot2D: Statistical Tools for volume data from 2D Gel Electrophoresis
Version 1.14.0

The purpose of this package is to analyze (i.e. Normalize and select significant spots) data issued from 2D GEl experiments

AuthorSebastien Artigaud
Bioconductor views DifferentialExpression MultipleComparison Proteomics
Date of publicationNone
MaintainerSebastien Artigaud <sebastien.artigaud@gmx.com>
LicenseGPL (>= 2)
Version1.14.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("prot2D")

Getting started

Package overview

Popular man pages

ES.prot: Create an ExpressionSet containing 2D Gel Volume Data
Norm.qt: Normalize 2D Gel Volume data using Quantiles Normalization
Norm.vsn: Normalize 2D Gel Volume data using VSN
pecten.fac: pecten.fac Dataset
prot2D-package: Statistics Tools for data issued from a 2D Gel...
RIplot: Ratio-Intensity Plot for 2D Gel Volume data
robust.fdr: "robust FDR" estimation
See all...

All man pages Function index File listing

Man pages

ES.prot: Create an ExpressionSet containing 2D Gel Volume Data
Norm.qt: Normalize 2D Gel Volume data using Quantiles Normalization
Norm.vsn: Normalize 2D Gel Volume data using VSN
pecten: Pecten Dataset
pecten.fac: pecten.fac Dataset
prot2D-package: Statistics Tools for data issued from a 2D Gel...
RIplot: Ratio-Intensity Plot for 2D Gel Volume data
robust.fdr: "robust FDR" estimation
Sim.Prot.2D: Simulate 2D Gel volume data
variousT: Various Tests for finding differentially expressed proteins...

Functions

ES.prot Man page Source code
Norm.qt Man page Source code
Norm.vsn Man page Source code
RIplot Man page Source code
Sim.Prot.2D Man page Source code
efronT.Prot Man page Source code
modT.Prot Man page Source code
pecten Man page
pecten.fac Man page
prot2D Man page
prot2D-package Man page
robust.fdr Man page Source code
samT.Prot Man page Source code
shrinkT.Prot Man page Source code
ttest.Prot Man page Source code
variousT.Prot Man page

Files

DESCRIPTION
NAMESPACE
R
R/fonction_Prot_final.R
R/robust-fdr.R
build
build/vignette.rds
data
data/pecten.RData
data/pecten.fac.RData
inst
inst/CITATION
inst/doc
inst/doc/prot2D.R
inst/doc/prot2D.Rnw
inst/doc/prot2D.pdf
man
man/ES.prot.Rd
man/Norm.qt.Rd
man/Norm.vsn.Rd
man/RIplot.Rd
man/Sim.Prot.2D.Rd
man/pecten.Rd
man/pecten.fac.Rd
man/prot2D-package.Rd
man/robust.fdr.Rd
man/variousT.Rd
vignettes
vignettes/images
vignettes/images/RIplot.png
vignettes/prot2D.Rnw
prot2D documentation built on May 20, 2017, 10:32 p.m.

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