listSplicingAnnotations: List alternative splicing annotations
In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Description
Usage
Arguments
Value
See Also
Examples
View source: R/data_inclusionLevels.R
Description
List alternative splicing annotations
Usage
1
listSplicingAnnotations(species = NULL, assembly = NULL, date = NULL)
Arguments
species
Character: filter results by species (regular expression)
assembly
Character: filter results by assembly (regular expression)
date
Character: filter results by date (regular expression)
Value
Named character vector with splicing annotation names
See Also
Other functions for PSI quantification:
filterPSI(),
getSplicingEventTypes(),
loadAnnotation(),
plotRowStats(),
quantifySplicing()
Examples
1
2
3
4
listSplicingAnnotations() # Return all alternative splicing annotations
listSplicingAnnotations(assembly="hg19") # Search for hg19 annotation
listSplicingAnnotations(assembly="hg38") # Search for hg38 annotation
listSplicingAnnotations(date="201(7|8)") # Search for 2017 or 2018 annotation
psichomics documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/data_inclusionLevels.R
Description
List alternative splicing annotations
Usage
1 | listSplicingAnnotations(species = NULL, assembly = NULL, date = NULL)
|
Arguments
species |
Character: filter results by species (regular expression) |
assembly |
Character: filter results by assembly (regular expression) |
date |
Character: filter results by date (regular expression) |
Value
Named character vector with splicing annotation names
See Also
Other functions for PSI quantification:
filterPSI(),
getSplicingEventTypes(),
loadAnnotation(),
plotRowStats(),
quantifySplicing()
Examples
1 2 3 4 | listSplicingAnnotations() # Return all alternative splicing annotations
listSplicingAnnotations(assembly="hg19") # Search for hg19 annotation
listSplicingAnnotations(assembly="hg38") # Search for hg38 annotation
listSplicingAnnotations(date="201(7|8)") # Search for 2017 or 2018 annotation
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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