queryEnsemblByGene: Query information from Ensembl
In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation
Description
Usage
Arguments
Value
See Also
Examples
View source: R/analysis_information.R
Description
Query information from Ensembl
Usage
1
2
3
queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)
Arguments
gene
Character: gene
species
Character: species (may be NULL for an Ensembl
identifier)
assembly
Character: assembly version (may be NULL for an Ensembl
identifier)
event
Character: alternative splicing event
data
Matrix or data frame: alternative splicing information
Value
Information from Ensembl
See Also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
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queryEnsemblByGene("BRCA1", "human", "hg19")
queryEnsemblByGene("ENSG00000139618")
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
psichomics documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/analysis_information.R
Description
Query information from Ensembl
Usage
1 2 3 | queryEnsemblByGene(gene, species = NULL, assembly = NULL)
queryEnsemblByEvent(event, species = NULL, assembly = NULL, data = NULL)
|
Arguments
gene |
Character: gene |
species |
Character: species (may be |
assembly |
Character: assembly version (may be NULL for an Ensembl identifier) |
event |
Character: alternative splicing event |
data |
Matrix or data frame: alternative splicing information |
Value
Information from Ensembl
See Also
Other functions to retrieve external information:
ensemblToUniprot(),
plotProtein(),
plotTranscripts()
Examples
1 2 3 4 | queryEnsemblByGene("BRCA1", "human", "hg19")
queryEnsemblByGene("ENSG00000139618")
event <- "SE_17_-_41251792_41249306_41249261_41246877_BRCA1"
queryEnsemblByEvent(event, species="human", assembly="hg19")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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