Description Usage Arguments Details Value Author(s) See Also Examples

Plots a graph using the `Rgraphviz`

library

1 2 3 |

`g` |
graph to plot provided as a |

`vertexSubset` |
subset of vertices that define the induced subgraph to be plotted. |

`boundary` |
flag set to |

`minimumSizeConnComp` |
minimum size of the connected components to be plotted. |

`pairup.i` |
subset of vertices to pair up with subset |

`pairup.j` |
subset of vertices to pair up with subset |

`highlight` |
subset of vertices to highlight by setting the color font to red. |

`annotation` |
name of an annotation package to transform gene identifiers into gene symbols when vertices correspond to genes. |

`layout` |
layout argument for the Rgraphviz library that plots the network. Possible values are |

This function acts as a wrapper for the functionality provided by the `Rgraphviz`

package to plot graphs in R. It should help to plot networks obtained with methods from
the`qpgraph`

package.

The plotted graph is invisibly returned as a `graphNEL-class`

object.

R. Castelo

1 2 3 4 5 6 7 8 | ```
## Not run:
require(Rgraphviz)
rndassociations <- qpUnifRndAssociation(10)
g <- qpAnyGraph(abs(rndassociations), threshold=0.7, remove="below")
qpPlotNetwork(g) ## this does not work at the moment and should be fixed
## End(Not run)
``` |

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