API for rCGH
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
| Global functions | |
|---|---|
| .createGeneDB | Source code |
| .getGFlags | Source code |
| .getRFlags | Source code |
| .medFlag | Source code |
| .onAttach | Source code |
| .readAgilentInfo | Source code |
| .readAgilentMatrix | Source code |
| .replaceFlags | Source code |
| .suppressDuplicProbes | Source code |
| .suppressFlags | Source code |
| .validAgilent | Source code |
| .validCytoScan | Source code |
| .validSNP6 | Source code |
| .validrCGHObject | Source code |
| Accessors | Man page |
| AllAccessors | Man page |
| EMnormalize | Man page |
| EMnormalize,rCGH-method | Man page |
| EMnormalize-methods | Man page |
| adjustSignal | Man page |
| adjustSignal,rCGH-method | Man page |
| adjustSignal-methods | Man page |
| agilentDB | Man page |
| byGeneTable | Man page Source code |
| getCNset | Man page |
| getCNset,rCGH-method | Man page |
| getCNset-methods | Man page |
| getInfo | Man page |
| getInfo,rCGH-method | Man page |
| getInfo-methods | Man page |
| getParam | Man page |
| getParam,rCGH-method | Man page |
| getParam-methods | Man page |
| getSegTable | Man page |
| getSegTable,rCGH-method | Man page |
| getSegTable-methods | Man page |
| hg18 | Man page |
| hg19 | Man page |
| hg38 | Man page |
| multiplot | Man page |
| multiplot,rCGH-method | Man page |
| multiplot-methods | Man page |
| plotDensity | Man page |
| plotDensity,rCGH-method | Man page |
| plotDensity-methods | Man page |
| plotLOH | Man page |
| plotLOH,rCGH-method | Man page |
| plotLOH-methods | Man page |
| plotProfile | Man page |
| plotProfile,rCGH-method | Man page |
| plotProfile-methods | Man page |
| rCGH | Man page |
| rCGH-Agilent-class | Man page |
| rCGH-SNP6-class | Man page |
| rCGH-class | Man page |
| rCGH-cytoScan-class | Man page |
| rCGH-generic-class | Man page |
| rCGH-oncoScan-class | Man page |
| rCGH-package | Man page |
| readAffyCytoScan | Man page Source code |
| readAffyOncoScan | Man page Source code |
| readAffySNP6 | Man page Source code |
| readAgilent | Man page Source code |
| readGeneric | Man page Source code |
| recenter | Man page |
| recenter<- | Man page |
| recenter<-,rCGH-method | Man page |
| recenter<--methods | Man page |
| segmentCGH | Man page |
| segmentCGH,rCGH-method | Man page |
| segmentCGH-methods | Man page |
| setInfo | Man page |
| setInfo<- | Man page |
| setInfo<-,rCGH-method | Man page |
| setInfo<--methods | Man page |
| show,rCGH-method | Man page |
| show-methods | Man page |
| view | Man page |
| view,rCGH-method | Man page |
| view-methods | Man page |
