plotLOH: Allelic Differences Visualization

In rCGH: Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data

Description

This function display a static view of the allele differences, when available.

Usage

## S4 method for signature 'rCGH'
plotLOH(object, Title=NULL)

Arguments

object	: An object of class "rCGH"
Title	: character string. A title for the density plot. If NULL (default), the sample name (when exists) is used.

Value

None.

Author(s)

Frederic Commo

See Also

plotDensity, plotProfile, multiplot, view

Examples

filePath <- system.file("extdata", "Affy_cytoScan.cyhd.CN5.CNCHP.txt.bz2",
    package = "rCGH")
cgh <- readAffyCytoScan(filePath, sampleName = "AffyScHD")
cgh <- adjustSignal(cgh, nCores=1)
cgh <- segmentCGH(cgh, nCores=1)
cgh <- EMnormalize(cgh)

# Static visalizations
plotLOH(cgh)

rCGH documentation built on Nov. 8, 2020, 8:30 p.m.