rCGH-oncoScan-class: Class '"rCGH-oncoScan"'

In rCGH: Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data

Description

An instance of class "rCGH-oncoScan", which inherits from the superclass "rCGH".
Slots described below are used to store sample information, analysis parameters, and segmentation results. All are accessible through specific "Accessors" functions.

Objects from the Class

Objects can be created by calls of the form new("rCGH-oncoScan", ...).

Slots

info:

Object of class "character": where sample information can be stored. See getInfo and setInfo.

cnSet:

Object of class "data.frame": the full data set. See getCNset.

param:

Object of class "list": the analysis parameters stored for traceability. getParam.

segTable:

Object of class "data.frame": the segmentation table. getSegTable.

Extends

Class "rCGH", directly.

Methods

No methods defined with class "rCGH-oncoScan" in the signature.

Author(s)

Frederic Commo

See Also

"rCGH", "rCGH-Agilent", "rCGH-SNP6", "rCGH-cytoScan", "rCGH-generic"

Examples

showClass("rCGH-oncoScan")

rCGH documentation built on Nov. 8, 2020, 8:30 p.m.