rTANDEM: Interfaces the tandem protein identification algorithm in R

This package interfaces the tandem protein identification algorithm in R. Identification can be launched in the X!Tandem style, by using as sole parameter the path to a parameter file. But rTANDEM aslo provides extended syntax and functions to streamline launching analyses, as well as function to convert results, parameters and taxonomy to/from R. A related package, shinyTANDEM, provides visualization interface for result objects.

Package details

AuthorFrederic Fournier <[email protected]>, Charles Joly Beauparlant <[email protected]>, Rene Paradis <[email protected]>, Arnaud Droit <[email protected]>
Bioconductor views ImmunoOncology MassSpectrometry Proteomics
MaintainerFrederic Fournier <[email protected]>
LicenseArtistic-1.0 | file LICENSE
Version1.22.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("rTANDEM")

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rTANDEM documentation built on Jan. 5, 2019, 6:35 p.m.