findPathwaysByLiterature: Find Pathways By Literature

Description Usage Arguments Details Value Examples

View source: R/findPathwaysByLiterature.R

Description

Retrieve pathways containing the query citation.

Usage

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Arguments

query

The character string to search for, e.g., a PMID, title keyword or author name.

Details

The score is from a lucene index search engine, ranging from 0 to 1 with higher scores for better matches. The two literature columns are lists of pubmed ids and titles for the citations matching the query per pathway. The graphId column lists the id for any objects in the GPML pathway model that have been spcifically annotated with the matching citations.

Value

A dataframe of pathway attributes in addition to query result score and literature details

Examples

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rWikiPathways documentation built on Feb. 28, 2021, 2:01 a.m.