findPathwaysByLiterature: Find Pathways By Literature
In rWikiPathways: rWikiPathways - R client library for the WikiPathways API
Description
Usage
Arguments
Details
Value
Examples
View source: R/findPathwaysByLiterature.R
Description
Retrieve pathways containing the query citation.
Usage
1
findPathwaysByLiterature(query)
Arguments
query
The character string to search for, e.g., a PMID, title
keyword or author name.
Details
The score is from a lucene index search engine, ranging from 0 to
1 with higher scores for better matches. The two literature columns are
lists of pubmed ids and titles for the citations matching the query per
pathway. The graphId column lists the id for any objects in the
GPML pathway model that have been spcifically annotated with the matching
citations.
Value
A dataframe of pathway attributes in addition to query result
score and literature details
Examples
1
2
3
4
5
{
findPathwaysByLiterature('19649250')
findPathwaysByLiterature('smith')
findPathwaysByLiterature('cancer')
}
rWikiPathways documentation built on Feb. 28, 2021, 2:01 a.m.
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Description Usage Arguments Details Value Examples
View source: R/findPathwaysByLiterature.R
Description
Retrieve pathways containing the query citation.
Usage
1 | findPathwaysByLiterature(query)
|
Arguments
query |
The |
Details
The score is from a lucene index search engine, ranging from 0 to 1 with higher scores for better matches. The two literature columns are lists of pubmed ids and titles for the citations matching the query per pathway. The graphId column lists the id for any objects in the GPML pathway model that have been spcifically annotated with the matching citations.
Value
A dataframe of pathway attributes in addition to query result
score and literature details
Examples
1 2 3 4 5 | {
findPathwaysByLiterature('19649250')
findPathwaysByLiterature('smith')
findPathwaysByLiterature('cancer')
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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