reb: Regional Expression Biases
Version 1.54.0

A set of functions to dentify regional expression biases

Browse man pages Browse package API and functions Browse package files

AuthorKyle A. Furge <kyle.furge@vai.org> and Karl Dykema <karl.dykema@vai.org>
Bioconductor views CopyNumberVariation Microarray Visualization
Date of publicationNone
MaintainerKarl J. Dykema <karl.dykema@vai.org>
LicenseGPL-2
Version1.54.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("reb")

Man pages

absMax: Absolute Maxima
buildChromCytoband: Construct a chromLocation object from a cytoband environment
buildChromMap: A function to generate an instantiation of a chromLocation...
cset2band: cset2band
fromRevIsh: Convert from revish strings to a matrix
Hs.arms: Hs.arms
isAbnormal: Is a band 'abnormal'?
mcr.eset: Example exprSet and chromLocation objects
movbin: movbin
movt: movt
naMean: Wrapper function for the arithmetic mean
regmap: image function wrapper
revish: Creation of CGH (reverse in situ hybridization) style...
rmAmbigMappings: Remove genes that map to multiple chromosomes from a...
smoothByRegion: reb
summarizeByRegion: Compute Summary Statistics of Genome Regions
tBinomTest: binomial t-test
writeGFF3: Output of a GFF compliant table describing the enhanced and...

Functions

Hs.arms Man page
MAP2chromLoc Source code
absMax Man page Source code
buildChromCytoband Man page Source code
buildChromMap Man page Source code
cgma Man page
cset2band Man page Source code
estimateCHRLEN Source code
fromRevIsh Man page Source code
genMeanMatrix Source code
isAbnormal Man page Source code
mcr.eset Man page
movbin Man page Source code
movt Man page Source code
naMean Man page Source code
one2many Source code
reb Man page
regmap Man page Source code
revish Man page Source code
rmAmbigMappings Man page Source code
smoothByRegion Man page Source code
summarizeByRegion Man page Source code
tBinomTest Man page Source code
writeGFF3 Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/reb.R
build
build/vignette.rds
data
data/Hs.arms.rda
data/mcr.eset.rda
inst
inst/doc
inst/doc/reb.R
inst/doc/reb.Rnw
inst/doc/reb.pdf
man
man/Hs.arms.Rd
man/absMax.Rd
man/buildChromCytoband.Rd
man/buildChromMap.Rd
man/cset2band.Rd
man/fromRevIsh.Rd
man/isAbnormal.Rd
man/mcr.eset.Rd
man/movbin.Rd
man/movt.Rd
man/naMean.Rd
man/regmap.Rd
man/revish.Rd
man/rmAmbigMappings.Rd
man/smoothByRegion.Rd
man/summarizeByRegion.Rd
man/tBinomTest.Rd
man/writeGFF3.Rd
src
src/movbin.c
vignettes
vignettes/reb.Rnw
reb documentation built on May 20, 2017, 10:43 p.m.