Explore and download data from the recount project available at https://jhubiostatistics.shinyapps.io/recount/. Using the recount package you can download RangedSummarizedExperiment objects at the gene, exon or exon-exon junctions level, the raw counts, the phenotype metadata used, the urls to the sample coverage bigWig files or the mean coverage bigWig file for a particular study. The RangedSummarizedExperiment objects can be used by different packages for performing differential expression analysis. Using http://bioconductor.org/packages/derfinder you can perform annotation-agnostic differential expression analyses with the data from the recount project as described at http://www.nature.com/nbt/journal/v35/n4/full/nbt.3838.html.
|Author||Leonardo Collado-Torres [aut, cre] (<https://orcid.org/0000-0003-2140-308X>), Abhinav Nellore [ctb], Andrew E. Jaffe [ctb] (<https://orcid.org/0000-0001-6886-1454>), Margaret A. Taub [ctb], Kai Kammers [ctb], Shannon E. Ellis [ctb] (<https://orcid.org/0000-0002-9231-0481>), Kasper Daniel Hansen [ctb] (<https://orcid.org/0000-0003-0086-0687>), Ben Langmead [ctb] (<https://orcid.org/0000-0003-2437-1976>), Jeffrey T. Leek [aut, ths] (<https://orcid.org/0000-0002-2873-2671>)|
|Bioconductor views||Coverage DataImport DifferentialExpression GeneExpression ImmunoOncology RNASeq Sequencing Software|
|Maintainer||Leonardo Collado-Torres <firstname.lastname@example.org>|
|Package repository||View on Bioconductor|
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