recount_genes: Gene annotation used in recount

Description Format References See Also


Gene annotation extracted from Gencode v25 (GRCh38.p7) used in recount. Data extraced on October 12th, 2017. The symbols were updated compared to the version from January 17th, 2017. It includes the sum of the width of the disjoint exons which can be used for normalizing the counts provided in the RangedSummarizedExperiment-class objects.


A GRanges-class with one range per gene. The names match their Gencode v25 ids. The GRanges-class has three metadata columns.


the Gencode v25 ids, identical to the names.


the sum of the width of the disjoint exons for that given gene.


a CharacterList with the corresponding gene symbols.


See Also

reproduce_ranges, recount_exons

recount documentation built on Dec. 20, 2020, 2:01 a.m.