recount_genes: Gene annotation used in recount
In recount: Explore and download data from the recount project
Description
Format
References
See Also
Description
Gene annotation extracted from Gencode v25 (GRCh38.p7) used in recount.
Data extraced on October 12th, 2017. The symbols were updated compared
to the version from January 17th, 2017.
It includes the sum of the width of the disjoint exons which can be
used for normalizing the counts provided in the
RangedSummarizedExperiment-class objects.
Format
A GRanges-class with one range per gene. The
names match their Gencode v25 ids. The GRanges-class
has three metadata columns.
- gene_id
the Gencode v25 ids, identical to the names.
- bp_length
the sum of the width of the disjoint exons for that
given gene.
- symbol
a CharacterList with the corresponding gene symbols.
References
https://jhubiostatistics.shinyapps.io/recount/
See Also
reproduce_ranges, recount_exons
recount documentation built on Dec. 20, 2020, 2:01 a.m.
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Description Format References See Also
Description
Gene annotation extracted from Gencode v25 (GRCh38.p7) used in recount. Data extraced on October 12th, 2017. The symbols were updated compared to the version from January 17th, 2017. It includes the sum of the width of the disjoint exons which can be used for normalizing the counts provided in the RangedSummarizedExperiment-class objects.
Format
A GRanges-class with one range per gene. The names match their Gencode v25 ids. The GRanges-class has three metadata columns.
- gene_id
the Gencode v25 ids, identical to the names.
- bp_length
the sum of the width of the disjoint exons for that given gene.
- symbol
a CharacterList with the corresponding gene symbols.
References
https://jhubiostatistics.shinyapps.io/recount/
See Also
reproduce_ranges, recount_exons
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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