Man pages for rexposome
Exposome exploration and outcome data analysis
| classification-methods | Method to get the classification of the samples from an... |
| clustering-methods | Method to perform clustering on the samples of an ExposomeSet |
| correlation-methods | Creation of an ExposomeCorr from an ExposomeSet. |
| ex_imp | 'imExposomeSet' for testing purpouses |
| expo | 'ExposomeSet' for testing purpouses |
| expo_c | 'ExposomeClust' for testing purpouses |
| expos-methods | Returns the exposures matrix of an ExposomeSet. |
| ExposomeClust-class | Class ExposomeClust |
| ExposomeCorr-class | Class ExposomeCorr |
| ExposomePCA-class | Class ExposomePCA |
| ExposomeSet-class | Class ExposomeSet |
| exposureNames-methods | Getter to obtain the exposures's names of an ExposomeSet or... |
| extract-methods | Raw data from 'ExWAS', 'ExposomeClust' and 'ExposomeCorr'. |
| ExWAS-class | Class ExWAS |
| exwas-methods | Testing the association between an exposure and a phenotype... |
| familyNames-methods | Getter to obtain the exposures's names of an ExposomeSet. |
| highAndLow-methods | Function to convert continuous exposures to categorical... |
| ilod-methods | Function to impute under-LOD values from an ExposomeSet |
| imExposomeSet-class | Class imExposomeSet |
| imputation-methods | Function to impute missing values from an ExposomeSet |
| imputeLOD | Function to impute values under limit of detection |
| invExWAS-methods | Testing the association between an exposure and a phenotype... |
| loadExposome | Creation of an ExposomeSet from 'data.frames' |
| loadExposome_plain | Creation of an ExposomeSet from single 'data.frame' |
| loadImputed | Creation of an imExposomeSet from 'data.frames' |
| me | 'data.frame' for testing purpouses |
| mExWAS-class | Class mExWAS |
| mexwas-methods | Testing the association between an exposure and a phenotype... |
| ndim-methods | Number of principal components in an ExposomePCA. |
| normalityTest-methods | It creates a 'data.frame' of boolean indicating if the... |
| pca-methods | Creation of an ExposomePCA from an ExposomeSet. |
| phenotypeNames-methods | Getter to obtain the phenotype's names of an ExposomeSet or... |
| plot3PCA-methods | Ploting PCA in a 3D space |
| plotClassification-methods | Draw the profile of the levels exposures after a... |
| plotCorrelation-methods | It draws both circos or matrix plot for the correlation in... |
| plotEffect-methods | Function to draw a plot of the pvalues stored in an 'ExWAS'... |
| plotEXP-methods | Plot correlation between exposures and PCA |
| plotExwas-methods | Function to draw a plot of the pvalues stored in an 'ExWAS'... |
| plotFamily-methods | It draws the profile of the exposome in an ExposomeSet |
| plotHistogram-methods | It draws a histogram for each exposure in an ExposomeSet |
| plotLOD-methods | It draws a chart with the percentage of under-LOD values in... |
| plotMissings-methods | It draws a chart with the percentage of missing in an... |
| plotPCA-methods | Ploting PCA |
| plotPHE-methods | Plot association score between phentoypes and PCA |
| plotVolcano-methods | Function to draw a plot of the pvalues stored in an 'ExWAS'... |
| readExposome | Creation of an ExposomeSet from files |
| rexposome | rexposome: Package for exposome exploration and outcome data... |
| standardize-methods | #' Summary of an ExposomeSet. #' #' Given an ExposomeSet is... |
| tableLOD-methods | It creates a vector with the amount of under-LOD exposures in... |
| tableMissings-methods | It creates a vector with the amount of missing in an... |
| tef-methods | Function to get the Threshold for effective tests (TEF) |
| toES | Method to convert an imExposomeSet to an ExposomeSet |
| trans-methods | Function to apply a transformation to the exposures of an... |
| volcano_plot | Function to draw a Volcano Plot |
