rgsepd: Gene Set Enrichment / Projection Displays

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Package details

AuthorKarl Stamm
Bioconductor views DifferentialExpression GeneSetEnrichment ImmunoOncology RNASeq Software
MaintainerKarl Stamm <karl.stamm@gmail.com>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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rgsepd documentation built on Nov. 8, 2020, 4:58 p.m.