IlluminaBodymapMeta: Metadata table for the included sample data

In rgsepd: Gene Set Enrichment / Projection Displays

Description

The metadata table required to inform GSEPD of the sample/condition and abbreviated names for each column of the included 'counts' dataset. You should mirror this table's structure for your dataset.

Usage

data(IlluminaBodymapMeta)

Format

A data frame with 16 observations on the following 3 variables.

Sample

A vector of the column names in your counts table, for the included sample data, it's four tissue types repeated four times each. For your data this must correspond to the column labels in the counts table.

Condition

The sample categorizations for use in differential expression, this should also be a vector the same length as the number of columns in your counts table. Here we have 'A' for each Adipose, 'B' for each muscle type, and 'C' for the blood samples.

SHORTNAME

Abbreviated names for each sample to appear in plots.

Value

A dataframe of sample identifiers for the rgsepd::IlluminaBodymap matrix.

Examples

data(IlluminaBodymapMeta)
str(IlluminaBodymapMeta) 

rgsepd documentation built on Nov. 8, 2020, 4:58 p.m.