Man pages for riboSeqR
Analysis of sequencing data from ribosome profiling experiments
| filterHits | Filters framecalled data based on the mean number of hits... |
| findCDS | Parses a transcriptome file looking for start/stop codons in... |
| frameCounting | Counts aligned reads within coding sequence regions by frame... |
| frameShift | Analyses frame called ribosome footprint data within coding... |
| lengthDist | A function plotting the density of lengths in a riboData... |
| libScales | Generates library scaling factors from ribosome footprint... |
| logoContext | Produces a motif of coding start context |
| plotCDS | Plots average ribosome footprint alignment to coding... |
| plotTranscript | Plots ribosome footprint abundance and mRNA coverage (if... |
| readRibodata | Reads ribosomal and (optionally) rna data from alignment... |
| riboCoding-class | Class "riboCoding" |
| riboData-class | Class "riboData" |
| riboSeqR-package | Analysis of sequencing data from ribosome profiling... |
| rnaCounts | Extracts mRNA counts from a riboDat object for a set of... |
| sliceCounts | Slices out count data from riboCoding object for use in... |
