Files in rnaEditr

Statistical analysis of RNA editing sites and hyper-editing regions

NEWS.md README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/rnaedit_df.rda

data/t_rnaedit_df.rda

R/TransformToGR.R R/AllCloseByRegions.R R/AllCoeditedRegions.R R/TestSingleRegion.R R/util_SitesToRegion.R R/data_rnaedit_df.R R/util_MakeModelFormula.R R/util_CreateRdrop.R R/util_GetMinPairwiseCor.R R/util_OrderSitesByLocation.R R/data_t_rnaedit_df.R R/SingleCoeditedRegion.R R/util_AddMetaData.R R/util_PlotEditingCorrelations.R R/CreateEditingTable.R R/SingleCloseByRegion.R R/util_RegionSummaryMethod.R R/SummarizeAllRegions.R R/TestAssociations.R R/SummarizeSingleRegion.R R/AnnotateResults.R R/util_CreateOutputDF.R R/util_MarkCoeditedSites.R R/util_CountSamplesPerGroup.R R/util_GetSitesLocations.R R/util_FindCorrelatedRegions.R

vignettes/region-based-analysis.png

vignettes/introduction_to_rnaEditr.Rmd

vignettes/site-specific-analysis.png

man/CreateOutputDF.Rd man/TestAssociations.Rd man/AllCoeditedRegions.Rd man/SingleCoeditedRegion.Rd man/SitesToRegion.Rd man/CreateEditingTable.Rd man/GetMinPairwiseCor.Rd man/MarkCoeditedSites.Rd man/AnnotateResults.Rd man/SummarizeAllRegions.Rd man/CreateRdrop.Rd man/GetSitesLocations.Rd man/OrderSitesByLocation.Rd man/AddMetaData.Rd man/SingleCloseByRegion.Rd man/TestSingleRegion.Rd man/MakeModelFormula.Rd man/PlotEditingCorrelations.Rd man/SummarizeSingleRegion.Rd man/RegionSummaryMethod.Rd man/rnaedit_df.Rd man/TransformToGR.Rd man/t_rnaedit_df.Rd man/FindCorrelatedRegions.Rd man/AllCloseByRegions.Rd man/CountSamplesPerGroup.Rd tests/testthat.R tests/testthat/test_AnnotateResults.R tests/testthat/test_AllCloseByRegions.R tests/testthat/test_TestAssociations.R tests/testthat/test_CreateEditingTable.R tests/testthat/test_SummarizeAllRegions.R tests/testthat/test_AllCoeditedRegions.R tests/testthat/test_TransformToGR.R inst/README.md inst/doc/introduction_to_rnaEditr.Rmd inst/doc/introduction_to_rnaEditr.R

inst/doc/introduction_to_rnaEditr.html

inst/extdata/hg38_annoGene_gr.RDS

inst/extdata/hg19_annoGene_gr.RDS

inst/extdata/pheno_df.RDS

inst/scripts/1-CreateAnnoGeneGR.R inst/scripts/2-CreateRnaEditAndPhenoDFs.R inst/scripts/3-Create_ex_data.R

rnaEditr documentation built on Nov. 8, 2020, 8:26 p.m.