rqubic: Qualitative biclustering algorithm for expression data analysis in R

This package implements the QUBIC algorithm introduced by Li et al. for the qualitative biclustering with gene expression data.

AuthorJitao David Zhang, with inputs from Laura Badi and Martin Ebeling
Date of publicationNone
MaintainerJitao David Zhang <jitao_david.zhang@roche.com>
LicenseGPL-2
Version1.20.0

View on Bioconductor

Files in this package

rqubic/DESCRIPTION
rqubic/Makefile
rqubic/NAMESPACE
rqubic/NEWS
rqubic/R
rqubic/R/AllClasses.R rqubic/R/AllMethods.R rqubic/R/c_output_parser.R rqubic/R/combineBiclust.R rqubic/R/onload.R rqubic/R/r_qubic_implementation.R rqubic/R/readBiclusterResults.R rqubic/R/rqubic_to_c_funcs.R
rqubic/build
rqubic/build/vignette.rds
rqubic/inst
rqubic/inst/CITATION
rqubic/inst/doc
rqubic/inst/doc/rqubic.R
rqubic/inst/doc/rqubic.Rnw
rqubic/inst/doc/rqubic.pdf
rqubic/inst/extdata
rqubic/inst/extdata/bic_1.out
rqubic/inst/extdata/bic_3.out
rqubic/inst/extdata/bic_null.out
rqubic/inst/extdata/sampleExpressionSet.blocks
rqubic/inst/extdata/sampleExpressionSet.chars
rqubic/inst/extdata/sampleExpressionSet.rules
rqubic/man
rqubic/man/QUBICBiclusterSet-class.Rd rqubic/man/combineBiclusts-methods.Rd rqubic/man/discretize.Rd rqubic/man/eSetDimName.Rd rqubic/man/fcFilter-methods.Rd rqubic/man/fcFilter.Rd rqubic/man/features-methods.Rd rqubic/man/generateSeeds-methods.Rd rqubic/man/parseQubicBlocks.Rd rqubic/man/quBicluster.Rd rqubic/man/readBiclusterResults.Rd rqubic/man/rqubic-package.Rd rqubic/man/writeQubicInputFile.Rd
rqubic/src
rqubic/src/bicluster.c
rqubic/src/bicluster.h
rqubic/src/discretize.c
rqubic/src/fib.c
rqubic/src/fib.h
rqubic/src/graph.c
rqubic/src/graph.h
rqubic/src/rqubic.c
rqubic/src/rqubic.h
rqubic/tests
rqubic/tests/c_output_parser_tests.R
rqubic/tests/rqubic_implementations.R
rqubic/tests/test_read.R
rqubic/tests/test_utilities.R
rqubic/vignettes
rqubic/vignettes/backup.sty
rqubic/vignettes/rqubic.Rnw
rqubic/vignettes/rqubic.bib

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