rqubic-package: Qualitative biclustering algorithm for expression data...

In rqubic: Qualitative biclustering algorithm for expression data analysis in R

Description

QUBIC is a qualitative biclustering algorithm for high-throughput expression data analysis. rqubic package implements this algorithm in R, partly with the codes contributed by Haibao Tang and Qin Ma (version 0.23 released without any limitation).

The rqubic package also provides parsers for the command line tool of qubic written in C.

Details

Package:	rqubic
Type:	Package
Version:	1.5
Date:	2011-04-11
License:	LGPL-2
LazyLoad:	yes

Part of the source code in C is modified from the source code of the QUBIC command line tool (in C) provided by Haibao Tang and Qin Ma [e-mail], downloaded from http://csbl.bmb.uga.edu/~maqin/bicluster/ on 01.03.2011, version 0.23.

Source code of QUBIC also uses open-source data structure library codes. See the README file included in the QUBIC command line tool source.

Author(s)

Jitao David Zhang <[e-mail]>, Laura Badi and Martin Ebeling Maintainer: Jitao David Zhang <[e-mail]>

References

Li et al. (2009) QUBIC: a qualitative biclustering algorithm for analyses of gene expression data Nucleic Acids Research 37:e101

rqubic documentation built on Nov. 8, 2020, 8:20 p.m.