API for sagenhaft
Collection of functions for reading and comparing SAGE libraries
| Global functions | |
|---|---|
| SAGEartifacts | Man page |
| combine.libs | Man page Source code |
| compare.lib.pair | Man page Source code |
| compute.sequence.neighbors | Man page Source code |
| compute.unique.tags | Man page Source code |
| create.matrix.csr | Man page Source code |
| difference.scatter.plot | Man page Source code |
| em.estimate.error.given | Man page Source code |
| estimate.errors.mean | Man page Source code |
| extract.ditags | Man page Source code |
| extract.lib.from.directory | Man page Source code |
| extract.lib.from.zip | Man page Source code |
| extract.library.tags | Man page Source code |
| plot.sage.library | Man page Source code |
| plot.sage.library.comparison | Man page Source code |
| print.sage.library | Man page Source code |
| print.sage.library.comparison | Man page Source code |
| read.phd.file | Man page Source code |
| read.sage.library | Man page Source code |
| read.sage.library.comparison | Man page Source code |
| read.seq.qual.filepair | Man page Source code |
| reestimate.lib.from.tagcounts | Man page Source code |
| remove.sage.artifacts | Man page Source code |
| revcomp | Man page Source code |
| sage.test | Man page Source code |
| sagelibrary.simulate | Man page Source code |
| summary.sage.library | Man page Source code |
| summary.sage.library.comparison | Man page Source code |
| table.sparse | Man page Source code |
| tagmatrix2tagnum | Man page Source code |
| tagnum2tagmatrix | Man page Source code |
| tagnum2tagsequence | Man page Source code |
| tagsequence2tagnum | Man page Source code |
| write.sage.library | Man page Source code |
| write.sage.library.comparison | Man page Source code |
