sage.library: Class sage.library
In sagenhaft: Collection of functions for reading and comparing SAGE libraries

Description Usage Arguments Details Author(s) References See Also Examples

The SAGE library class contains all the data and annotation for a SAGE library. It can contain two data.frames.

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read.sage.library(file)
write.sage.library(x, file=paste(x$libname, "sage", sep="."),
                   what="complete")

`x`	A sage library object
`file`	File name to read or write to
`what`	"complete", read complete librarary tags and sequences; "tags", read only tags and counts

SAGE library objects consists of one or two data.frames. The data.frame "tags" contains all the unique tags in the library and its counts. The data.frame "seqs" contains all the individual tag sequences and associated quality values. read.sage.library and write.sage.library are utility functions to read and write SAGE libraries.

Tim Beissbarth

http://tagcalling.mbgproject.org

extract.lib

library(sagenhaft)
E15postHFI <- read.sage.library(system.file("extdata", "E15postHFI.sage",
                                package="sagenhaft")) 
E15postHFI