sagenhaft: Collection of functions for reading and comparing SAGE libraries

This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.

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Package details

AuthorTim Beissbarth <[email protected]>, with contributions from Gordon Smyth <[email protected]> and Lavinia Hyde <[email protected]>.
Bioconductor views SAGE
MaintainerTim Beissbarth <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
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sagenhaft documentation built on Nov. 1, 2018, 3:57 a.m.