sagenhaft: Collection of functions for reading and comparing SAGE libraries
Version 1.46.0

This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.

Getting started

Package details

AuthorTim Beissbarth <tim.beissbarth@ams.med.uni-goettingen.de>, with contributions from Gordon Smyth <smyth@wehi.edu.au> and Lavinia Hyde <hyde@wehi.edu.au>.
Bioconductor views SAGE
MaintainerTim Beissbarth <tim.beissbarth@ams.med.uni-goettingen.de>
LicenseGPL (>= 2)
Version1.46.0
URL http://tagcalling.mbgproject.org
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("sagenhaft")

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sagenhaft documentation built on May 31, 2017, 11:19 a.m.