encoderModel_gaussian_kernel: Guassian kernel

Description Usage Arguments Value

View source: R/backend_encoder.R

Description

Tensorflow implementation of tsne's gaussian_kernel, accepts tensors of float64 (for precision) and returns tensors of float32

Usage

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encoderModel_gaussian_kernel(data, data_b = NULL, dim, perplexity = 30,
  method = "euclidean", betas.fixed = 0, diag = "zero")

Arguments

data

cell x feature data matrix

data_b

second cell x feature data matrix, if none provided then data_b = data

dim

number of cells in of mini-batch

perplexity

neighborhood parameter for gaussian kernel

method

distance metric prior to computing probabilities

diag

indicator for self similarity

Value

Tensorflow op


scAlign documentation built on April 28, 2020, 6:10 p.m.