API for scClassify
scClassify: single-cell Hierarchical Classification
| Global functions | |
|---|---|
| .scClassifyTrainModel | Man page Source code |
| ClassifyError | Source code |
| DWKNNcor | Source code |
| H | Source code |
| H1 | Source code |
| KNNcor | Source code |
| WKNNcor | Source code |
| alpha | Source code |
| calEnsembleRes | Source code |
| calculateSimilarity | Source code |
| cellTypeTrain | Man page |
| cellTypeTrain,scClassifyTrainModel-method | Man page |
| cellTypeTree | Man page |
| cellTypeTree,scClassifyTrainModel-method | Man page |
| collap | Source code |
| constructTree | Source code |
| currentClass | Source code |
| cutdigits | Source code |
| cutree_iterative | Source code |
| cutzeros | Source code |
| digits | Source code |
| distancematrix | Source code |
| doBI | Source code |
| doChisSquared | Source code |
| doDD | Source code |
| doDV | Source code |
| doLimma | Source code |
| featureSelection | Source code |
| features | Man page |
| features,scClassifyTrainModel-method | Man page |
| fitLC | Source code |
| fitLC_mixture | Source code |
| funMixModel | Source code |
| getEnsembleRes | Source code |
| getJointRes | Source code |
| getN | Man page Source code |
| getNumericPredRes | Source code |
| getPredRes | Source code |
| getResByWeights | Source code |
| getThreshold | Source code |
| getTrainWeights | Source code |
| hierarchyKNNcor | Source code |
| hopach | Source code |
| init_fit | Source code |
| labelstomss | Source code |
| learningCurve | Man page Source code |
| mix_threshold | Source code |
| model | Man page |
| model,scClassifyTrainModel-method | Man page |
| modelweights | Man page |
| modelweights,scClassifyTrainModel-method | Man page |
| msscheck | Source code |
| msscollap | Source code |
| msscomplete | Source code |
| mssinitlevel | Source code |
| mssmulticollap | Source code |
| mssnextlevel | Source code |
| mssrundown | Source code |
| msssplitcluster | Source code |
| name | Man page |
| name,scClassifyTrainModel-method | Man page |
| newnextlevel | Source code |
| newsplitcluster | Source code |
| nonzeros | Source code |
| orderelements | Source code |
| paircoll | Source code |
| plotCellTypeTree | Man page Source code |
| predict_scClassify | Man page Source code |
| predict_scClassifyJoint | Man page Source code |
| predict_scClassifySingle | Source code |
| quiet | Source code |
| reLevelCellTypeTree | Source code |
| runHOPACH | Man page Source code |
| runSampleCal | Man page Source code |
| runSubSampling | Source code |
| scClassify | Man page Source code |
| scClassifyTrainModel-class | Man page |
| scClassifyTrainModelList | Man page Source code |
| scClassifyTrainModelList-class | Man page |
| scClassify_example | Man page |
| silcheck | Source code |
| thin_cor | Source code |
| trainClassExample_wang | Man page |
| trainClassExample_xin | Man page |
| train_scClassify | Man page Source code |
| train_scClassifySingle | Source code |
| wtd_rank2 | Source code |
