Files in scGPS
A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/doc/vignette.Rmd
inst/doc/vignette.html
inst/doc/vignette.R vignettes/vignette.Rmd R/scgps_prediction_summary.R R/Utilities.R R/training_gene_sample.R R/day_2_cardio_cell_sample.R R/RcppExports.R R/DimReduction.R R/CORE_clustering_bagging.R R/MainLassoLDATraining.R R/day_5_cardio_cell_sample.R R/CORE_clustering.R R/scgps_object.R
src/dist_mat_cpp.cpp
src/RcppExports.cpp
src/utils_rcpp.cpp
src/dist_parallel_cpp.cpp
src/Makevars
man/bootstrap_prediction.Rd man/calcDistArma.Rd man/subset_cpp.Rd man/PCA.Rd man/rcpp_parallel_distance.Rd man/distvec.Rd man/rcpp_Eucl_distance_NotPar.Rd man/summary_accuracy.Rd man/predicting.Rd man/find_stability.Rd man/clustering.Rd man/day_2_cardio_cell_sample.Rd man/find_optimal_stability.Rd man/CORE_subcluster.Rd man/day_5_cardio_cell_sample.Rd man/summary_prediction_lda.Rd man/plot_reduced.Rd man/add_import.Rd man/plot_CORE.Rd man/rand_index.Rd man/training_gene_sample.Rd man/calcDist.Rd man/summary_prediction_lasso.Rd man/reformat_LASSO.Rd man/new_scGPS_object.Rd man/plot_optimal_CORE.Rd man/annotate_clusters.Rd man/tSNE.Rd man/sub_clustering.Rd man/find_markers.Rd man/CORE_bagging.Rd man/mean_cpp.Rd man/CORE_clustering.Rd man/bootstrap_parallel.Rd man/var_cpp.Rd man/top_var.Rd man/training.Rd man/summary_deviance.Rd man/PrinComp_cpp.Rd man/tp_cpp.Rd man/clustering_bagging.Rd man/new_summarized_scGPS_object.Rd
man/figures/scGPSlogo.png
man/figures/packagePlan.png
build/vignette.rds
tests/testthat.R tests/testthat/test_Sample1.R
data/day_2_cardio_cell_sample.rda
data/day_5_cardio_cell_sample.rda
data/datalist
data/training_gene_sample.rda
scGPS documentation built on Oct. 31, 2019, 2:23 a.m.