Description Usage Arguments Value References
A wrapper function for fitting various internal functions to select the optimal setting of the contrastive and penalization parameters. For internal use only.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | selectParams(
target,
background,
center,
scale,
n_eigen,
alg,
contrasts,
penalties,
clust_method,
n_centers,
max_iter,
linkage_method,
n_medoids,
parallel,
clusters,
eigdecomp_tol,
eigdecomp_iter
)
|
target |
The target (experimental) data set, in a standard format such
as a |
background |
The background data set, in a standard format such as a
|
center |
A |
scale |
A |
n_eigen |
A |
alg |
A |
contrasts |
A |
penalties |
A |
clust_method |
A |
n_centers |
A |
max_iter |
A |
linkage_method |
A |
n_medoids |
A |
parallel |
A |
clusters |
A |
eigdecomp_tol |
A |
eigdecomp_iter |
A |
Output structure matching either that of fitCPCA
or
fitGrid
(or their parallelized variants, namely either
bpFitCPCA
and link{bpFitGrid}
, respectively).
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