A test dataset containing a single-cell RNA-seq (scRNA-seq) read counts matrix and its cell type information.
counts. A non-negative integer matrix of scRNA-seq raw read counts, rows are genes and columns are cells.
labels. A vector of integer specifying the cell types in the read counts matrix, corresponding to the columns of
oneCell. A non-negative vector of scRNA-seq raw read counts of a cell for each gene.
counts. A matrix of raw read counts of scRNA-seq data which has 200 genes (rows) and 150 cells (columns).
labels. A vector of integer specifying the two cell types in
counts. Also could be generated by:
labels <- c(rep(1,50), rep(2,100)).
oneCell. A vector of a cell's raw read counts for 24538 gene.
Petropoulos S, et al. Cell, 2016, 165(4): 1012-1026.
scRecover, for imputation of single-cell RNA-seq data.
estDropoutNum, for estimating dropout gene number in a cell.
countsSampling, for downsampling the read counts in a cell.
normalization, for normalization of single-cell RNA-seq data.
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