subdistsmult: Computes the dot product between the subcentroids from the...
In scmap: A tool for unsupervised projection of single cell RNA-seq data
Description
Computes the dot product between the subcentroids from the indexed reference and the subvectors of an element of the query dataset.
Returns an M by k matrix. Used as an intermediate step (in NNfirst and NNmult) for calculating
an approximation of the cosine similarity between the query and the reference.
Usage
1
subdistsmult(subcentroids, query_chunks, M, k, cellnum)
Arguments
subcentroids
A list of matrices containing the subcentroids of each chunk.
query_chunks
A list of matrices containing the chunks of the query dataset after it has been split
according to the product quantization method
M
An integer specifying the number of chunks
k
An integer specifying the number of subcentroids per chunk
cellnum
An integer specifying the column of the query dataset we wish to consider
scmap documentation built on Nov. 8, 2020, 8:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Computes the dot product between the subcentroids from the indexed reference and the subvectors of an element of the query dataset. Returns an M by k matrix. Used as an intermediate step (in NNfirst and NNmult) for calculating an approximation of the cosine similarity between the query and the reference.
Usage
1 | subdistsmult(subcentroids, query_chunks, M, k, cellnum)
|
Arguments
subcentroids |
A list of matrices containing the subcentroids of each chunk. |
query_chunks |
A list of matrices containing the chunks of the query dataset after it has been split according to the product quantization method |
M |
An integer specifying the number of chunks |
k |
An integer specifying the number of subcentroids per chunk |
cellnum |
An integer specifying the column of the query dataset we wish to consider |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.