mergeMethSegs: Merges neighbouring methylation loci with the same pattern of...
In segmentSeq: Methods for identifying small RNA loci from high-throughput sequencing data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Within a region of cytosine methylation, there may be some cytosines
which show no evidence of methylation. The presence of these cytosines
may lead to the region being split into multiple methylation loci. This
function merges neighbouring loci if the pattern of expression is the
same in each locus, and if they are not separated by too great a genomic
distance.
Usage
1
mergeMethSegs(segs, aD, gap, cl)
Arguments
segs
A methData object defining the loci to be merged.
aD
An alignmentMeth object from which the loci have been derived.
gap
The maximum gap below which neighbouring loci may be merged.
cl
A cluster object, or NULL.
Value
An object of type methData.
Author(s)
Thomas J. Hardcastle
See Also
segmentSeq documentation built on Nov. 8, 2020, 5:18 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
Description
Within a region of cytosine methylation, there may be some cytosines which show no evidence of methylation. The presence of these cytosines may lead to the region being split into multiple methylation loci. This function merges neighbouring loci if the pattern of expression is the same in each locus, and if they are not separated by too great a genomic distance.
Usage
1 | mergeMethSegs(segs, aD, gap, cl)
|
Arguments
segs |
A |
aD |
An |
gap |
The maximum gap below which neighbouring loci may be merged. |
cl |
A cluster object, or NULL. |
Value
An object of type methData.
Author(s)
Thomas J. Hardcastle
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.