Files in segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing data

DESCRIPTION
NAMESPACE
inst/doc/methylationAnalysis.R inst/doc/segmentSeq.R inst/doc/methylationAnalysis.pdf inst/doc/segmentSeq.pdf
inst/doc/segmentSeq.Rnw
inst/doc/methylationAnalysis.Rnw
inst/extdata/SL10.txt
inst/extdata/SL32.txt
inst/extdata/short_Sample_17A_trimmed.fastq_CG_methCalls.gz
inst/extdata/SL9.txt
inst/extdata/SL26.txt
inst/extdata/short_13_C24_col_trim.fastq_CG_methCalls.gz
inst/extdata/short_Sample_28_trimmed.fastq_CG_methCalls.gz
inst/extdata/short_18B_C24_C24_trim.fastq_CG_methCalls.gz
vignettes/segmentSeq.Rnw
vignettes/methylationAnalysis.Rnw
R/plotGenomicDistributions.R R/classifySeg.R R/getOverlaps.R R/givenExpression.R R/segMeth-accessors.R R/segClass-accessors.R R/selectLoci.R R/plotGenome.R R/segData-accessors.R R/constructNulls.R R/AllClasses.R R/mergeSegs.R R/lociData-accessors.R R/heuristicSeg.R R/processAD.R R/utilityFunctions.R R/getCounts.R R/alignmentData-accessors.R R/lociLikelihoods.R R/alignmentClass-accessors.R R/findChunks.R R/alignmentMeth-accessors.R R/methData-accessors.R R/processPosteriors.R R/processTags.R man/getCounts.Rd man/lociLikelihoods.Rd man/plotMeth.Rd man/heuristicSeg.Rd man/hSL.Rd man/classifySeg.Rd man/plotMethDistribution.Rd man/alignmentClass-class.Rd man/segmentSeq-package.Rd man/normaliseNC.Rd man/segData-class.Rd man/givenExpression.Rd man/methData-class.Rd man/selectLoci.Rd man/alignmentMeth-class.Rd man/thresholdFinder.Rd man/mergeMethSegs.Rd man/readMethods.Rd man/averageMethylationRegions.Rd man/readMeths.Rd man/getOverlaps.Rd man/processAD.Rd man/summariseLoci.Rd man/segClass-class.Rd man/findChunks.Rd man/segMeth-class.Rd man/plotGenome.Rd man/lociData-class.Rd man/alignmentData-class.Rd man/SL.Rd
build/vignette.rds
data/hSL.RData
segmentSeq documentation built on Nov. 1, 2018, 5:07 a.m.