Files in segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/hSL.RData
R/segMeth-accessors.R
R/processTags.R
R/processAD.R
R/alignmentMeth-accessors.R
R/alignmentClass-accessors.R
R/givenExpression.R
R/getCounts.R
R/segClass-accessors.R
R/heuristicSeg.R
R/mergeSegs.R
R/plotGenome.R
R/alignmentData-accessors.R
R/utilityFunctions.R
R/plotGenomicDistributions.R
R/classifySeg.R
R/lociLikelihoods.R
R/AllClasses.R
R/lociData-accessors.R
R/constructNulls.R
R/methData-accessors.R
R/findChunks.R
R/processPosteriors.R
R/segData-accessors.R
R/getOverlaps.R
R/selectLoci.R
vignettes/methylationAnalysis.Rnw
vignettes/segmentSeq.Rnw
man/averageMethylationRegions.Rd
man/hSL.Rd
man/plotMeth.Rd
man/thresholdFinder.Rd
man/lociLikelihoods.Rd
man/readMethods.Rd
man/readMeths.Rd
man/summariseLoci.Rd
man/getOverlaps.Rd
man/selectLoci.Rd
man/classifySeg.Rd
man/processAD.Rd
man/segMeth-class.Rd
man/plotMethDistribution.Rd
man/getCounts.Rd
man/alignmentMeth-class.Rd
man/plotGenome.Rd
man/segData-class.Rd
man/givenExpression.Rd
man/segmentSeq-package.Rd
man/mergeMethSegs.Rd
man/alignmentClass-class.Rd
man/alignmentData-class.Rd
man/methData-class.Rd
man/heuristicSeg.Rd
man/SL.Rd
man/lociData-class.Rd
man/normaliseNC.Rd
man/findChunks.Rd
man/segClass-class.Rd
inst/doc/segmentSeq.R
inst/doc/methylationAnalysis.Rnw
inst/doc/methylationAnalysis.R
inst/doc/segmentSeq.Rnw
inst/doc/methylationAnalysis.pdf
inst/doc/segmentSeq.pdf
inst/extdata/SL32.txt
inst/extdata/short_13_C24_col_trim.fastq_CG_methCalls.gz
inst/extdata/SL10.txt
inst/extdata/short_18B_C24_C24_trim.fastq_CG_methCalls.gz
inst/extdata/SL9.txt
inst/extdata/SL26.txt
inst/extdata/short_Sample_17A_trimmed.fastq_CG_methCalls.gz
inst/extdata/short_Sample_28_trimmed.fastq_CG_methCalls.gz
