Files in seqbias

Estimation of per-position bias in high-throughput sequencing data

configure

NAMESPACE

DESCRIPTION

build/vignette.rds

src/common.h

src/twobitseq.hpp

src/logger.cpp

src/Makevars.common

src/kmer_matrix.hpp

src/sequencing_bias.cpp

src/pos_table.h

src/kmer_matrix.cpp

src/sequencing_bias.hpp

src/motif.hpp

src/motif.cpp

src/bam_plbuf.c

src/Makevars

src/seqbias.cpp

src/common.c

src/sam.c

src/twobitseq.cpp

src/config.h

src/bam_aux.c

src/miscmath.c

src/miscmath.h

src/logger.h

src/pos_table.c

src/logger.hpp

src/yaml-cpp/ostream.h

src/yaml-cpp/tag.h

src/yaml-cpp/exceptions.h

src/yaml-cpp/iterpriv.h

src/yaml-cpp/iterator.cpp

src/yaml-cpp/nodebuilder.cpp

src/yaml-cpp/emitterutils.cpp

src/yaml-cpp/ptr_stack.h

src/yaml-cpp/noncopyable.h

src/yaml-cpp/eventhandler.h

src/yaml-cpp/collectionstack.h

src/yaml-cpp/singledocparser.h

src/yaml-cpp/token.h

src/yaml-cpp/simplekey.cpp

src/yaml-cpp/regex.cpp

src/yaml-cpp/conversion.h

src/yaml-cpp/emitterstate.h

src/yaml-cpp/stream.h

src/yaml-cpp/null.cpp

src/yaml-cpp/emitter.cpp

src/yaml-cpp/regeximpl.h

src/yaml-cpp/conversion.cpp

src/yaml-cpp/nodebuilder.h

src/yaml-cpp/scanscalar.cpp

src/yaml-cpp/aliasmanager.h

src/yaml-cpp/COPYING

src/yaml-cpp/node.cpp

src/yaml-cpp/emitterutils.h

src/yaml-cpp/emitfromevents.h

src/yaml-cpp/parser.cpp

src/yaml-cpp/singledocparser.cpp

src/yaml-cpp/stlnode.h

src/yaml-cpp/iterator.h

src/yaml-cpp/yaml.h

src/yaml-cpp/nodereadimpl.h

src/yaml-cpp/nodeutil.h

src/yaml-cpp/directives.h

src/yaml-cpp/scanner.cpp

src/yaml-cpp/null.h

src/yaml-cpp/emitfromevents.cpp

src/yaml-cpp/traits.h

src/yaml-cpp/aliasmanager.cpp

src/yaml-cpp/exp.h

src/yaml-cpp/license.txt

src/yaml-cpp/scantag.cpp

src/yaml-cpp/stream.cpp

src/yaml-cpp/parser.h

src/yaml-cpp/scanscalar.h

src/yaml-cpp/dll.h

src/yaml-cpp/nodeimpl.h

src/yaml-cpp/directives.cpp

src/yaml-cpp/emitterstate.cpp

src/yaml-cpp/anchor.h

src/yaml-cpp/scantoken.cpp

src/yaml-cpp/mark.h

src/yaml-cpp/stlemitter.h

src/yaml-cpp/ostream.cpp

src/yaml-cpp/node.h

src/yaml-cpp/stringsource.h

src/yaml-cpp/scanner.h

src/yaml-cpp/tag.cpp

src/yaml-cpp/ptr_vector.h

src/yaml-cpp/scantag.h

src/yaml-cpp/setting.h

src/yaml-cpp/regex.h

src/yaml-cpp/indentation.h

src/yaml-cpp/ltnode.h

src/yaml-cpp/streamcharsource.h

src/yaml-cpp/nodeownership.h

src/yaml-cpp/nodeownership.cpp

src/yaml-cpp/emittermanip.h

src/yaml-cpp/exp.cpp

src/yaml-cpp/emitter.h

R/seqbias.R

vignettes/overview.Rnw

vignettes/overview.bib

man/seqbias-package.Rd man/count_reads.Rd man/seqbias_predict.Rd man/seqbias_save.Rd man/random_intervals.Rd man/seqbias_fit.Rd man/kmer_freq.Rd man/seqbias-class.Rd man/seqbias_load.Rd

inst/CITATION

inst/doc/overview.Rnw

inst/doc/overview.R inst/doc/overview.pdf

inst/extra/example.fa

inst/extra/example.bam

inst/extra/example.bam.bai

inst/extra/example.fa.fai

seqbias documentation built on Nov. 8, 2020, 5:55 p.m.