seqbias_load: Loading seqbias models
In seqbias: Estimation of per-position bias in high-throughput sequencing data

Description Usage Arguments Details Value Author(s) See Also Examples

Loads a seqbias model from a file written with 'seqbias.save'.

1	seqbias.load(ref_fn, model_fn)

`ref_fn`	filename of a reference sequence against which the reads are aligned in FASTA format.
`model_fn`	filename of a saved seqbias model

A large seqbias model can take some time (several minutes) to fit. It is often preferable to do this just once. This function load the model from a file in YAML format, having been written with 'seqbias.save'.

A seqbias class.

Daniel Jones dcjones@cs.washington.edu

seqbias.save

  reads_fn <- system.file( "extra/example.bam", package = "seqbias" )
  ref_fn <- system.file( "extra/example.fa", package = "seqbias" )

  sb <- seqbias.fit( ref_fn, reads_fn )

  seqbias.save( sb, "my_seqbias_model.yml" )

  # load sometime later
  sb <- seqbias.load( ref_fn, "my_seqbias_model.yml" )