easyLoad_broadPeak: easyLoad_broadPeak takes a character vector of file paths to...

Description Usage Arguments Value Examples

View source: R/functions_easyLoad.R

Description

easyLoad_broadPeak takes a character vector of file paths to narrowPeak files from MACS2 and returns a named list of GRanges.

Usage

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easyLoad_broadPeak(
  file_paths,
  file_names = NULL,
  n_cores = getOption("mc.cores", 1)
)

Arguments

file_paths

character vector of paths to narrowPeak files. If named, those names will be used in output unless overriden by providing file_names.

file_names

character vector of names for output list. If not NULL will override any existing names for file_paths. Default is NULL.

n_cores

number of cores to use, uses mc.cores option if set or 1.

Value

a named list of GRanges loaded from file_paths

Examples

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bp_f = system.file("extdata/test_loading.broadPeak",
    package = "seqsetvis", mustWork = TRUE)
easyLoad_broadPeak(bp_f, "my_broadPeak")

seqsetvis documentation built on Nov. 8, 2020, 5:57 p.m.