API for signeR
Empirical Bayesian approach to mutational signature discovery
| Global functions | |
|---|---|
| Average_exp | Man page |
| Average_exp,SignExp-method | Man page |
| Average_sign | Man page |
| Average_sign,SignExp-method | Man page |
| BICboxplot | Man page Source code |
| Classify | Man page |
| Classify,SignExp,character-method | Man page |
| Comp_labels | Source code |
| DiffExp | Man page |
| DiffExp,SignExp,character-method | Man page |
| EstimateParameters | Source code |
| ExposureBarplot | Man page |
| ExposureBarplot,SignExp-method | Man page |
| ExposureBoxplot | Man page |
| ExposureBoxplot,SignExp-method | Man page |
| ExposureHeat | Man page |
| ExposureHeat,SignExp-method | Man page |
| GibbsSamplerCpp | Source code |
| Median_exp | Man page |
| Median_exp,SignExp-method | Man page |
| Median_sign | Man page |
| Median_sign,SignExp-method | Man page |
| Normalize | Man page |
| Normalize,SignExp-method | Man page |
| Optimal_sigs | Source code |
| Paths | Man page |
| Paths,SignExp-method | Man page |
| Reorder_mutations | Man page |
| Reorder_mutations,SignExp,numeric-method | Man page |
| Reorder_samples | Man page |
| Reorder_samples,SignExp,numeric-method | Man page |
| Reorder_signatures | Man page |
| Reorder_signatures,SignExp,numeric-method | Man page |
| SignExp | Man page |
| SignExp-class | Man page |
| SignExpConstructor | Source code |
| SignHeat | Man page |
| SignHeat,SignExp-method | Man page |
| SignPlot | Man page |
| SignPlot,SignExp-method | Man page |
| eBayesNMF | Source code |
| genCountMatrixFromVcf | Man page Source code |
| genOpportunityFromGenome | Man page Source code |
| getFirstGenoAltIndex | Source code |
| isBadGeno | Source code |
| isGenoIndexRef | Source code |
| read.snv.context | Source code |
| revcomp | Source code |
| setMutations | Man page |
| setMutations,SignExp-method | Man page |
| setSamples | Man page |
| setSamples,SignExp-method | Man page |
| signeR | Man page Source code |
| signeR-package | Man page |
